GgaEX0026214 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20774955-20776267:+
Coord C1 exon
chr8:20774955-20774999
Coord A exon
chr8:20775307-20775434
Coord C2 exon
chr8:20776143-20776267
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACTGCTTGTATTTCCAAAGGGA
3' ss Score
6.43
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
ATCCCAAGGATAACCTCAGCTATAAGCACCTTATCCCATGGATTG
Seq A exon
GGAATGGCTTGCTGATCCTGCATGGGCCCAAATGGCACCAACATCGGAAGCTCCTGACACCAGGCTTTCATTACGACGTCTTGAAGCCTTATGTAGCCCTCATGGCAGAGTCTACCAATGTGATGCTG
Seq C2 exon
GATAAGTGGGAAAAGCTGATCACAAATGGGAAATCGGTGGAGCTCTTTGAGCACGTCAGCTTGATGACTCTCGACAGCATCATGAAATGTGCCTTCAGCTACCACAGCAACTGCCAGACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(9.2=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATAACCTCAGCTATAAGCACCT
R:
GTCGGTCTGGCAGTTGCTG
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]