RnoEX0025992 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134515286-134519866:-
Coord C1 exon
chr5:134519822-134519866
Coord A exon
chr5:134519205-134519332
Coord C2 exon
chr5:134515286-134515410
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATCTCCCCTCCCTTCTCAGGGA
3' ss Score
11.7
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCCGAAGGCTGCAGATGTGTATGACTTCTTCCTCCAGTGGATCG
Seq A exon
GGAAAGGCCTACTAGTTCTGGATGGGCCAAAATGGTTCCAGCACCGCAAGCTGCTCACACCTGGCTTCCATTATGATGTGCTGAAGCCCTATGTGGCCATATTTGCTGAGTCCACACGTATGATGCTG
Seq C2 exon
GACAAGTGGGAGAAAAAGGCTAGTGAAAATAAGAGCTTTGACATCTTCTGTGACGTAGGCCACATGGCCCTGGACACCCTCATGAAGTGCACCTTCGGCAAAGGAGACAGCGGCCTAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(9.2=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGGCTGCAGATGTGTAT
R:
CCTAGGCCGCTGTCTCCTTT
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]