HsaEX6030779 @ hg38
Exon Skipping
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46810808-46814315:+
Coord C1 exon
chr1:46810808-46810949
Coord A exon
chr1:46812496-46812623
Coord C2 exon
chr1:46814209-46814315
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCATCCCTTCCCCAGGGA
3' ss Score
10.58
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATCCAGGAGACGGGGAGCCTGGACAAAGTGGTGTCCTGGGCCCACCAGTTCCCGTATGCCCACCCACTCTGGTTCGGACAGTTCATTGGCTTCCTGAACATCTATGAGCCTGACTATGCCAAAGCTGTGTACAGCCGTGGGG
Seq A exon
GGAGAGGCCTGCTGGTTCTTGAGGGGCCCAAGTGGTTGCAGCACCGCAAGCTGCTCACACCTGGCTTTCATTATGATGTGCTGAAGCCCTATGTGGCCGTGTTCACTGAGTCTACACGTATCATGCTG
Seq C2 exon
ACCAGGTCATCAGGGAGCGGAAGGCAGCCCTGCAGGATGAGAAGGTGCGGAAGAAGATCCAGAACCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(25.6=100)
C2:
PF0006717=p450=FE(14.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGACGGGGAGCCTG
R:
GGCACCCAGGAGAATGTC
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains