GgaEX1002794 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36843290-36844451:-
Coord C1 exon
chr7:36844341-36844451
Coord A exon
chr7:36844058-36844162
Coord C2 exon
chr7:36843290-36843394
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACAGACTTTTCTTTTTCTAGCTG
3' ss Score
7.79
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
TCTAATTATGTATATACTGATAGCGCAAAGAAGATGCGGGATAAATACAGTGTGGTATTGGATACTCCTGGATACAGGACTGTTCAGGAACTAAAAACCCATTTGAGTGAT
Seq A exon
CTGGTTTACAGAGCTGCAGGCAAGGAGCTGAAGACAAAATACACTTCCGTCCTTAACACACCTGACTTCTTAAGAGCCAAGGAAGGACAAAGAATACAGAGCCAG
Seq C2 exon
TATTTGTATGTGGCACTTGCCACGAAAGAGAGACCTCATCACCATGCTGGTAATCAGACTCCAGCCTTCACACATGCCAGGCATGTAAAAGACATGGTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'108-108,'108-107,109-108=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.371
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(44.8=35.1)
A:
NO
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACTGATAGCGCAAAGAAGATGC
R:
TGTCTTTTACATGCCTGGCA
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]