GgaEX1002794 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34716314-34717475:-
Coord C1 exon
chr7:34717365-34717475
Coord A exon
chr7:34717082-34717186
Coord C2 exon
chr7:34716314-34716418
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACAGACTTTTCTTTTTCTAGCTG
3' ss Score
7.79
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
TCTAATTATGTATATACTGATAGCGCAAAGAAGATGCGGGATAAATACAGTGTGGTATTGGATACTCCTGGATACAGGACTGTTCAGGAACTAAAAACCCATTTGAGTGAT
Seq A exon
CTGGTTTACAGAGCTGCAGGCAAGGAGCTGAAGACAAAATACACTTCCGTCCTTAACACACCTGACTTCTTAAGAGCCAAGGAAGGACAAAGAATACAGAGCCAG
Seq C2 exon
TATTTGTATGTGGCACTTGCCACGAAAGAGAGACCTCATCACCATGCTGGTAATCAGACTCCAGCCTTCACACATGCCAGGCATGTAAAAGACATGGTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'36-34,'36-33,37-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.371
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(44.8=35.1)
A:
NO
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACTGATAGCGCAAAGAAGATGC
R:
TGTCTTTTACATGCCTGGCA
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]