GgaEX1002802 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36822017-36822888:-
Coord C1 exon
chr7:36822775-36822888
Coord A exon
chr7:36822540-36822644
Coord C2 exon
chr7:36822017-36822121
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATGTGAGCTTTCCCTGACAGATC
3' ss Score
8.7
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
AAAGAGTACAAAAAAGCCTTGGAATTAGAAATTAAAGGAAAAGGTCTGTCAGAACTGGCTTTGGAAACACCTGATTTTGTGAGAGCAAAGAATGCCACTGACATTGCTAGCCAG
Seq A exon
ATCAAATACAAACAGTTGGCAGAAATGGAGAAGGCCAACTACACCAGTGTTGTCGATACTCCAGAGATCATTCATGCCCAGCAGGTCAAAAACCTTTCAAGCCAG
Seq C2 exon
AAAAAGTACAAGGAAGAGGCAGAAAAGACCATGCCATACTATGTGCCTGTAGCAGACACACCAGAAATGCAGAGAGTCCGTGAGAATCAAAAGAACTTCAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'135-135,'135-134,136-135=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.581
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTGGAATTAGAAATTAAAGGAA
R:
GCTGAAGTTCTTTTGATTCTCACGG
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]