RnoEX0059000 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37679696-37681777:-
Coord C1 exon
chr3:37681664-37681777
Coord A exon
chr3:37680657-37680761
Coord C2 exon
chr3:37679696-37679800
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTGGGTGTCCTTTTACAGATT
3' ss Score
9.66
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAGAATATAAGCGAGACCTAGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAACGAGACTCCAGATTTTATGCGGGCCAGGAATGCTACCGACATTGCCAGCCAG
Seq A exon
ATTAAGTACAAGCAATCGGCAGAAATGGAAAAGGCCAATTTCACTTCTGTTGTTGATACCCCAGAAATTATCCATGCTCAGCAGGTCAAGAACCTCTCTAGCCAG
Seq C2 exon
AAAAAGTACAAGGAAGATGCAGAGAAGTCCATGTCATATTACGAGACTGTCTTGGATACCCCAGAGATGCAAAGAGTCCGTGAGAACCAGAAGAACTTCAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'145-157,'145-156,146-157
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.371 C2=0.429
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATATAAGCGAGACCTAGAGCTG
R:
GAGGCTGAAGTTCTTCTGGTTCT
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]