GgaEX1002808 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34677854-34691283:-
Coord C1 exon
chr7:34691191-34691283
Coord A exon
chr7:34678232-34678324
Coord C2 exon
chr7:34677854-34677961
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGTATGCTGTACTCTGTAGGTG
3' ss Score
8.71
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
ATTAAATACAAGGAGAGCATTGGAAAAGGAACTCCAATTCCTGATCTCCCAGAAGTGAAACGTGTCAAGGAGACGCAGAAGCACATCAGCTCG
Seq A exon
GTGTTGTACAAAGAACACCTTGCAAAAGGAACCCCAACACCGATGACCCCCGAGATGGAGAGAGCAAAGCGCAACCAGGAAAACATCAGCTCG
Seq C2 exon
GTCCTTTACTCAGACAGCTTCCGAAAACAGGTACAAGGTAAAGCTGCATATGTTCTGGATACACCTGAAATGCGGCGTGTGCGGGAGACACAGAAACACATCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-33/33=25-C2
Average complexity
C1
Mappability confidence:
88%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.751 C2=0.528
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
A:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCCAATTCCTGATCTCCC
R:
ATGTGTTTCTGTGTCTCCCGC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]