GgaEX1003081 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75616090-75616892:+
Coord C1 exon
chr1:75616090-75616315
Coord A exon
chr1:75616506-75616632
Coord C2 exon
chr1:75616771-75616892
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATACCTTAACACACTCAGGTG
3' ss Score
2
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TGATGAAGGTCAAGCATCTCTCCAAGTTACTGTACCTGACACTATTACAGAATGGAATGCCAATACCTTCTGTGTTGCTGATACTGGCTTTGGGCTTTCTCATTTAGCAACACTTAGAGTCTTCCAGCCTTTCTTTGTAGACCTGTCACTGCCATACTCTGTGATCCAAGGAGAGATTTTCAGCCTGAAAGCCACCATCTTCAACTACCTCAAGGACTGTATCCAA
Seq A exon
GTGCACACCACCCTCATAGAGACTCCAGAACTAAAGGTGGATGCCTGTCCAGGCTGCCAGTTCACCAGCTGCCTCTGTGCCAATGAAGCAAAAATCTTTGCATGGAATGTGACAGCCACTAGACTGG
Seq C2 exon
GCAAAGTGAATGTTACTGTGAGCAGTGTGGCAGAAGATTCGCATAATCTGTGTGATAACAGGGTTGCTGTGACCCCATTGCAAGGAAAGATGGACACAGTGATAAAACCTTTGCTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.3=100)
A:
PF0020717=A2M=PD(4.4=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATACTGGCTTTGGGCTT
R:
TCCATCTTTCCTTGCAATGGGG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]