GgaEX1003083 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79270216-79271421:+
Coord C1 exon
chr1:79270216-79270418
Coord A exon
chr1:79270816-79271031
Coord C2 exon
chr1:79271356-79271421
Length
216 bp
Sequences
Splice sites
3' ss Seq
GACTTTCTCTTTACCTTCAGGAT
3' ss Score
11.41
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTTTTTTTCTCTATGCATCAGCAGAGCATCTGACATCAGATTCCAGTAGTGAAGAATCTTCTTCTATGATTGAGATAGTAGCCTATATCCTTCTGGCTCATGTTTCCAAACCAGACTTTGCTGTCAATGACAGTGCAGTCAGCAAGCTTGTGCACTGGCTCAGTAAACAAAGAAATGCTCTCGGGGGATTTGCTTCCACACAG
Seq A exon
GATACAGTCGTTAGCCTGCAGGCCCTGGCTCAGTATGCAGCCCTGATTCCTCATGAGGTCAGAGATGTGAAGGTGACAGTGAAAGGCAAAGAGGCTTCTCCGCTAGAGTTCCATGTGCACAAAAATAATAAGCTAGTCTTGCATCAAGCATCTCTCCTTGAAGTCCCAGGGATGTACACAGTAGAGGCAACTGGCAGTGGCTGTGTCTACATACAG
Seq C2 exon
TTATTGGTTATCAGTTTGTTAAAAGCTGGAGGCATAAATAGGCCTTTGGCTCATGCAGAAAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252-'38-40,'38-39,39-40=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.0=100)
A:
PF076789=A2M_comp=PD(5.4=18.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACATCAGATTCCAGTAGTGA
R:
ACTTTTCTGCATGAGCCAAAGG
Band lengths:
238-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]