GgaEX1003083 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75621177-75625191:+
Coord C1 exon
chr1:75621177-75621330
Coord A exon
chr1:75623906-75624121
Coord C2 exon
chr1:75625101-75625191
Length
216 bp
Sequences
Splice sites
3' ss Seq
GACTTTCTCTTTACCTTCAGGAT
3' ss Score
11.41
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATACAATGCTGGATAACGCCTTACGTTGTCTTAAGAATGTTACATTTGATGAGACCAGCCTTTATGTCAAGGCCTTGATGGCTTACGTATTCACACTGACGGAGGATGTGGAGATGAGACAGGAGCTCCTGGATAAGTTAGAGAAAGAAACTG
Seq A exon
GATACAGTCGTTAGCCTGCAGGCCCTGGCTCAGTATGCAGCCCTGATTCCTCATGAGGTCAGAGATGTGAAGGTGACAGTGAAAGGCAAAGAGGCTTCTCCGCTAGAGTTCCATGTGCACAAAAATAATAAGCTAGTCTTGCATCAAGCATCTCTCCTTGAAGTCCCAGGGATGTACACAGTAGAGGCAACTGGCAGTGGCTGTGTCTACATACAG
Seq C2 exon
TTACACTGGGGACCGTGAAACCAGTAATATGGCCCTGGTGGAGGTGGATATGCTGTCAGGGTTCATTCCTACAAAAAGGTCTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.3=100)
A:
PF076789=A2M_comp=PD(5.4=18.1)
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACAATGCTGGATAACGCCT
R:
TCTTTCACAGACCTTTTTGTAGGA
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]