GgaEX1003087 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75617057-75618264:+
Coord C1 exon
chr1:75617057-75617108
Coord A exon
chr1:75617417-75617500
Coord C2 exon
chr1:75618088-75618264
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTTCCCTTCATTAGATA
3' ss Score
7.24
5' ss Seq
TTGGTGATA
5' ss Score
-0.79
Exon sequences
Seq C1 exon
CCAGGAGGCATACTACAAGAGAAGACCCAAAACGCCTTTCTCTGTGCTACAG
Seq A exon
ATAACACAGTCTCTGAAGAATTCTCCCTGACCCTGCCTGCAGAAACGCTGGAGGGATCTGGTCGAGCCACTTTCTCTGTGATTG
Seq C2 exon
GGGATATCATGGGCCCAGCACTTCAAAATTTAGATCAGCTGCTTCAGATGCCTTTTGGCTGTGGTGAACAGAATATGGTTCAGTTTGCACCAAACATCTTCGTACTCCAGTACTTGAAGAAGACTAAACAATTGGATCCAGAAATTGAAGTTATAGCACTCTATTTCCTGAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAACGCCTTTCTCTGTGC
R:
ACTTCAATTTCTGGATCCAATTGT
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]