HsaEX6065106 @ hg19
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9312910-9315244:-
Coord C1 exon
chr12:9315193-9315244
Coord A exon
chr12:9313629-9313712
Coord C2 exon
chr12:9312910-9313086
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGGGCTGTCTGTTTCTAAAGGTG
3' ss Score
7.86
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTGAAGGTATTGAGCAAGAAAAGACTTTCAGTTCTATGACCTGTGCCTCAG
Seq A exon
GTGCTAATGTGTCTGAGCAGTTGTCCTTGAAGCTCCCATCAAATGTGGTCAAAGAATCTGCCAGAGCTTCTTTCTCAGTTCTGG
Seq C2 exon
GTGACATATTAGGTTCTGCTATGCAAAATATACAAAATCTCCTCCAGATGCCATATGGCTGTGGAGAACAGAACATGGTCCTATTTGCTCCTAACATCTATGTCTTGAACTATCTGAATGAAACCCAGCAGCTGACGCAGGAGATCAAGGCCAAGGCCGTTGGCTATCTCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(2.2=11.1)
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCTATGACCTGTGCCTCA
R:
CTTGATCTCCTGCGTCAGCTG
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)