GgaEX6003325 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79473644-79475168:-
Coord C1 exon
chr1:79475117-79475168
Coord A exon
chr1:79474739-79474822
Coord C2 exon
chr1:79473644-79473820
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGTTACGTTTTCTTGTTAGGCA
3' ss Score
7.85
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTGAAGGTATTAAAAAAGAATTGACTCAGAGCTCCCTCATCTGCACAAAAG
Seq A exon
GCACAACAGTTTCTGAACCAGTGCTTCTCAGCCTGCCAAGAAATGTAGTGCAGGGATCAGCCAGAGTTTATTTCTCTGTCATTG
Seq C2 exon
GAGATATTTTGGGTACAGCATTAAGGAACATGGAAAACCTCCTCCACATGCCTTACGGCTGTGGAGAACAGAACATGGCGTTGTTCACACCCAACATCTATGTCCTGGATTATCTGAATAAGACTGGGCAGCTGACGGAAGAGATTAGAGTCAAGAGTACTGGATATTTAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTCCCTCATCTGCACAA
R:
TAATCTCTTCCGTCAGCTGCC
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]