BtaEX6024047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101169657-101173216:+
Coord C1 exon
chr5:101169657-101169708
Coord A exon
chr5:101171759-101171842
Coord C2 exon
chr5:101173040-101173216
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGATATTTTTTCTTTCCAGGCA
3' ss Score
10.33
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CCTGAAGGTATTGAAAAAGAGATGACTCAAAGTTTCCTTATCTGTACACAAG
Seq A exon
GCACCAAAGTCTCCAGGCAGGTAGATTTGAATTTGACAAATGATGTCGTAGAAGGATCAACCAGGGCCTTTTTCACTGTTGTGG
Seq C2 exon
GGGATATTCTAGGACTTGCAATACAGAATCTGGAGAATCTTTTCCAAATGCCCTATGGAGGTGGAGAACAGAATATTGCCCTGCTAGCATCCAATACCTACATCCTAGACTATCTGAAATCTACTAAACAACTGACAGAGGAAGTTAAATCTAAAGCTTTATTCTTCTTATCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAAGTTTCCTTATCTGTACACA
R:
ACTTCCTCTGTCAGTTGTTTAGT
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]