RnoEX6015272 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161878843-161881154:-
Coord C1 exon
chr4:161881100-161881154
Coord A exon
chr4:161879938-161880021
Coord C2 exon
chr4:161878843-161879019
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCGGTGTTTTTCCTTTCAGGTA
3' ss Score
12.86
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CAGCCTGAAGGTATTGAAAAAGAATCAACCCAAAGTTTCCTTATCTGCCCAAAAG
Seq A exon
GTACCAAAGCCTCAAAGCAAATAACTCTGGAATTGCCAAACGATGTAGTGGAAGGATCAGCCAGATCTTTTGTCACTTTTGTGG
Seq C2 exon
GAGACATTCTGGGAGTCGCAATGCAGAATCTAGAGAGCCTTCTCCAGACACCCTATGGCTGCGGTGAACAGAACATTGCCCAGCTGGCAGCTGACATTTATATACTTGACTACCTCAACGCTACCAAACAGCTGACAGAAGAGGTCAGATCCAAGGCTCTTCTTCTCTTATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'27-25,'27-24,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGTTTCCTTATCTGCCC
R:
TCTGTCAGCTGTTTGGTAGCG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]