MmuEX6007310 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128552153-128554391:-
Coord C1 exon
chr6:128554340-128554391
Coord A exon
chr6:128553245-128553328
Coord C2 exon
chr6:128552153-128552329
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTATGGATGTGTTCTTTCAGGTA
3' ss Score
9.32
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTGAAGGTATTGAAAAAGAAGCAACTCAAAGTTTCCTCATCTGTCCAAAAG
Seq A exon
GTACCAAAGCCTCAAAACAAACACTTCTGGAATTGCCAAGCAATGTAGTAGAAGGTTCAGTCAGATCTTTTGTCACCATTGTGG
Seq C2 exon
GGGACATTCTGGGAGTCGCAATGCAGAATCTGGAGAGCCTTCTCCAAATGCCCTATGGGTGTGGTGAACAGAACATTGCCCAGCTAGCATCTGACGTTTACATACTGGACTACCTGAAAGCTACCGACCAGCTGACAGAAGAACTCAAATCTAAGGCTCAGCGTCTCTTATCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'42-34,'42-32,43-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTCAAAGTTTCCTCATCTGT
R:
GTTCTTCTGTCAGCTGGTCGG
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types