MmuEX6007310 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128502171-128504409:-
Coord C1 exon
chr6:128504358-128504409
Coord A exon
chr6:128503263-128503346
Coord C2 exon
chr6:128502171-128502347
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTATGGATGTGTTCTTTCAGGTA
3' ss Score
9.32
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTGAAGGTATTGAAAAAGAAGCAACTCAAAGTTTCCTCATCTGTCCAAAAG
Seq A exon
GTACCAAAGCCTCAAAACAAACACTTCTGGAATTGCCAAGCAATGTAGTAGAAGGTTCAGTCAGATCTTTTGTCACCATTGTGG
Seq C2 exon
GGGACATTCTGGGAGTCGCAATGCAGAATCTGGAGAGCCTTCTCCAAATGCCCTATGGGTGTGGTGAACAGAACATTGCCCAGCTAGCATCTGACGTTTACATACTGGACTACCTGAAAGCTACCGACCAGCTGACAGAAGAACTCAAATCTAAGGCTCAGCGTCTCTTATCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTCAAAGTTTCCTCATCTGT
R:
GTTCTTCTGTCAGCTGGTCGG
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: