GgaEX1003812 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15242253-15244687:-
Coord C1 exon
chr14:15244477-15244687
Coord A exon
chr14:15243249-15243456
Coord C2 exon
chr14:15242253-15242396
Length
208 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTGCTTTTTTCCAGGAA
3' ss Score
10.94
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
GATGGAAGGCGACCCGTAAATCCAGCTTTTTGGTGGGTGAATGATGAAGGGGAGGAGGTGAAGTGGAGCTTTGAAGAGTTGGGATTTCTGTCCAGGAAAACAGCTAACATACTGTCTGAGGCATGTGGTTTGCAGAGAGGTGATAGAGTTCTGGCAGTTCTGCCTCGTGTCCCTGAATGGTGGCTACTGAGTATAGCCTGCATCCGGGCAG
Seq A exon
GAATTGTCTTTATTCCAGGAACGTCCCAATTAACAGCCAAAGATATTTTATACCGCCTTCAGGCTTCAAAGGCCAAGTGCATGATTACCAATGATACTCTGGCACCTGTAGTGGAATCTATCTTGCCTGACTGCCAGTTTCTGAAAACTAAACTAATTGTAGCCAAAGGGAACAGAGATGGGTGGCTCAATCTCAAAGAACTCTTTGC
Seq C2 exon
GGTGACATCTGCTGACCACAAATGCGTTAAGACAAGAAATGATGACCCAATGCTCATCTATTTTACTAGTGGAAGTACAGGCTCTCCAAAAATGGTGGTGCAGTCCCACAGCAGTTACGGCATCGGATTTGCAACCAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
PF0050123=AMP-binding=FE(16.6=100)
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGGAGGAGGTGAAGTG
R:
AATCCGATGCCGTAACTGCTG
Band lengths:
296-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]