MmuEX6013571 @ mm10
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119530268-119534377:+
Coord C1 exon
chr7:119530268-119530478
Coord A exon
chr7:119531773-119531980
Coord C2 exon
chr7:119534234-119534377
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTGTGTGACCCAAGGTG
3' ss Score
6.34
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACAGGGCACCGGCCCCCAAATCCTGCATTCTGGTGGGTGAACGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGTGTGTGGCCTGCAACCTGGAGACAGAATGATGCTGGTGCTTCCGAGACTCCCAGATTGGTGGCTGATCAGCGTGGCTTGTATGCGAACAG
Seq A exon
GTGTGGTCATGATCCCAGGAGTCTCCCAGCTGACAGCGAAGGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAGTGATGCCCTAGCTCCGCAAGTGGATGCCATCAGTGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGTGTCTGACACCAGCCGTCCAGGCTGGATCAATTTCCGAGAACTCCTGAG
Seq C2 exon
AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTCACCAGTGGAACCACAGGGGCCCCCAAGATGGTGGAACATTCCCAGTCCAGCTATGGATTGGGTTTTGTGGCCAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
PF0050123=AMP-binding=FE(16.7=100)
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCTCAGGAACAGAAGTCA
R:
TGGCCACAAAACCCAATCCAT
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types