GgaEX1003824 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15223024-15223935:-
Coord C1 exon
chr14:15223812-15223935
Coord A exon
chr14:15223222-15223302
Coord C2 exon
chr14:15223024-15223125
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTTATTTTTACAGGGA
3' ss Score
8.89
5' ss Seq
CAGGTTTAT
5' ss Score
4.29
Exon sequences
Seq C1 exon
CTACAAATTCATGAATCTGAAGCACTGCATGAGTGGAGGGGAACCGCTAAACCCAGAAGTCATTGACCAGTGGAAAAGCAAGACAGGGCTAGACATCTATGAAGTATATGGCCAGACTGAAGCG
Seq A exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
Seq C2 exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.8=100)
A:
PF0050123=AMP-binding=FE(6.2=100)
C2:
PF0050123=AMP-binding=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACCGCTAAACCCAGAAG
R:
CCAAGTGGTCTTACAGGTTTGCT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]