MmuEX0003601 @ mm9
Exon Skipping
Gene
ENSMUSG00000047026 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:126852157-126854202:+
Coord C1 exon
chr7:126852157-126852280
Coord A exon
chr7:126853856-126853936
Coord C2 exon
chr7:126854101-126854202
Length
81 bp
Sequences
Splice sites
3' ss Seq
GAAACATGTCCTCTTCATAGGGA
3' ss Score
7.47
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATATCAATTCAAGAGGCTGCGGCACTGCCTGACAGGAGGGGAGCCACTCAACCCCGAAGTGCTGGAACAGTGGAAGATGCAAACTGGGCTGGAGCTGTACGAGGGCTACGGACAGACCGAAGTG
Seq A exon
GGAATAATTTGCGCCAATCGCAAAGGAGAAGCAATTAAACCAGGTTCCATGGGAAAAGGAGTAGTGCCGTACGATGTGCAG
Seq C2 exon
ATTATAGATGAAAATGGAAATATCCTACCATCCGGCAAGGAAGGGGAAATTGCCCTTAGGCTGAAGTCCGATCGGCCCTTCTGTTTCTTCTCTGAATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100),PF086946=UFC1=PD(13.3=26.2)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATTCAAGAGGCTGCGGC
R:
ATTTCCCCTTCCTTGCCGGAT
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: