DreEX0010857 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44879930-44880682:-
Coord C1 exon
chr2:44880559-44880682
Coord A exon
chr2:44880239-44880319
Coord C2 exon
chr2:44879930-44880031
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTATTTTATTTATCTCTCAGGTT
3' ss Score
10.11
5' ss Seq
CAGGTCCAA
5' ss Score
-1.33
Exon sequences
Seq C1 exon
GTATAAATTCCAGGCTCTTGAACACTGTCTGTGTGCCGGAGAGCCCATTAACCCTGAGGTCATGTGCAAATGGAAAGAGCTCACTGGACTGGACATCTACGAGGGATACGGACAGACTGAGACT
Seq A exon
GTTTTAATAGCGGGCACATTCAAAGGCATGAAGATCAAACCAGGATCTTTTGGAAAAGCATCACCAGGATATGACGTGCAG
Seq C2 exon
GTGGTGGATGAAAATGGCTCTGTTGTGCCAAAAGGACAAGAGGGAGACCTCGGCATCCGAGTGAAACCAGAGAGACCCTTCTCTCTTTTTACAGAGTATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCTGTGTGCCGGAGAG
R:
CTCTGGTTTCACTCGGATGCC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]