MmuEX6013566 @ mm9
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:126680720-126681903:+
Coord C1 exon
chr7:126680720-126680843
Coord A exon
chr7:126681599-126681679
Coord C2 exon
chr7:126681802-126681903
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGACACTGGTTTCTCTCCAGGTT
3' ss Score
7.56
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTACAAGTTCCAATGTCTGAGGCACTGTTTGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGGACAAGTGGAAGAGCCAGACAGGCCTGGAGCTCCATGAAGGCTATGGACAATCAGAAACA
Seq A exon
GTTGTCATCTGTGGCAATTCAAGAAACTCGACAATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG
Seq C2 exon
ATTGTAGATGAGGAGGGCAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCTGTCCGAATCAAGCCTACTAGACCCTTCTGTTTCTTCAACTGCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.206
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTTTGACGGGTGGAGAG
R:
GTAGGCTTGATTCGGACAGCA
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: