HsaEX6042595 @ hg19
Exon Skipping
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:26060]
Coordinates
chr16:20441000-20442643:+
Coord C1 exon
chr16:20441000-20441123
Coord A exon
chr16:20442315-20442395
Coord C2 exon
chr16:20442542-20442643
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTACTGCGTTCTCCCCAGGTT
3' ss Score
10.46
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GTACCAGTTTCAGAGCCTGAGGCACTGTCTGACCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGGAAACACCAGACTGGTGTGGAGCTGTACGAAGGCTATGGCCAGTCTGAAACG
Seq A exon
GTTGTCATCTGTGCCAATCCAAAAGGCATGAAAATCAAGTCTGGATCCATGGGGAAGGCGTCCCCACCCTACGATGTGCAG
Seq C2 exon
ATTGTGGATGATGAGGGCAACGTCCTGCCTCCTGGAGAAGAGGGGAATGTTGCCGTCCGTATCAGACCCACTCGGCCCTTCTGTTTCTTCAATTGCTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.111 C2=0.265
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(2.1=10.5)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGTTTCAGAGCCTGAGG
R:
CGGCAACATTCCCCTCTTCTC
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)