RnoEX6004587 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189259055-189260210:+
Coord C1 exon
chr1:189259055-189259178
Coord A exon
chr1:189259908-189259988
Coord C2 exon
chr1:189260109-189260210
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGACACGAGTTTCTCTCCAGGTC
3' ss Score
5.51
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTACAAGTTCCAGTGCCTCAGACACTGTTTGGCCGGTGGAGAAGCCCTCAACTCTGACGTGAGGGACAAGTGGAAGAACCAGACAGGCCTGGAGATCCATGAAGGCTACGGACAATCAGAAACA
Seq A exon
GTCCTCATCTGTGGCAATTTTAGAGGCTCAACGATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG
Seq C2 exon
ATTGTAGACGAGGAGGGTAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCCATCCGCATCAAACCTACTAGACCCTTCTGTCTCTTCAACTGCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.127
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTCCAGTGCCTCAGAC
R:
TTCCCTCTTTTCCTGGAGGCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]