BtaEX0002264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18226019-18227331:+
Coord C1 exon
chr25:18226019-18226148
Coord A exon
chr25:18227011-18227091
Coord C2 exon
chr25:18227230-18227331
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTGGTTTCTCTTCAGGTT
3' ss Score
10.53
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGAAAGGTACCAGTTTCAGAGCTTGAGACACTGTGTGACCGGAGGGGAGGCCCTGACTCCTGATGTGAGGGAAAAGTGGAAGAGCCAGACGGGCCTGGAGCTGCACGAAGGCTATGGCCAGTCTGAAACC
Seq A exon
GTTGTAATCTGTGCCAATCCAAAAGGGATGAAAATCAAGTCAGGATCCATGGGGAAAGCGTCCCCACCATATGATGTGCAG
Seq C2 exon
GTTGTAGATGAGGAGGGCAATATCTTACCTCCTGGAGAAGAAGGGAATGTTGCCATCCGTGTCAGACCCACCAGACCCTTCTGTTTCTTCACTTGCTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449_MULTIEX1-9/10=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.353
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.4=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGACACTGTGTGACCGG
R:
GGTCTGACACGGATGGCAAC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development