GgaEX1003831 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14482791-14484064:-
Coord C1 exon
chr14:14483941-14484064
Coord A exon
chr14:14483219-14483299
Coord C2 exon
chr14:14482791-14482892
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATATTTATCTATTATGCAGGTA
3' ss Score
7.39
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CTACAAATTCATGACTGTGAAACACTGTCTATCTGGAGGAGAACCACTCAATCCTGAGGTGATGGAGAAGTGGAAAATCCAAACAGGGCTGGATATCTATGAAGGCTATGGCCAGACCGAAACA
Seq A exon
GTAACAATATGTGCCAATATGAAAGGAATGAAAATTAAACCTGGTTCCTTGGGAAAAGCTGTTCCACCTTATGATGTGCGG
Seq C2 exon
ATCATAGATGACCATGGGGCTGTTCTGCCTGAAGGAGAAGAAGGCAACATTGCTATCCAAGTTAAACCTTCACGACCCTTCTGCATGTTCTCTGAGTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-6/24=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGAACCACTCAATCCT
R:
GCAGAAGGGTCGTGAAGGTTT
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]