GgaEX1006068 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15632793-15634311:+
Coord C1 exon
chr14:15632793-15632916
Coord A exon
chr14:15633465-15633545
Coord C2 exon
chr14:15634210-15634311
Length
81 bp
Sequences
Splice sites
3' ss Seq
GAGAAAAATATTTATTACAGGTG
3' ss Score
4.43
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTGCACATCCAACAGCCTGCGGCACTGTGTGAGCGCCGGGGAGCCAATCAACCCCGAGGTGATGGCCAAGTGGAAAGCATGGACAGGGCTGGATATCCATGAATGCTACGGACAAACAGAAACT
Seq A exon
GTGCTTGTCTGTGGAAATTTTAAAGGAATGGAAATTAAACCTGGCTCTATGGGAAAGCCATCACCAGGGTATGATGTCAAG
Seq C2 exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.2=100)
C2:
PF0050123=AMP-binding=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACATCCAACAGCCTGC
R:
CCTTCTTTTCCAGGAGGCAGA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]