Special

GgaEX1006068 @ galGal4

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14918715-14920233:+
Coord C1 exon
chr14:14918715-14918838
Coord A exon
chr14:14919387-14919467
Coord C2 exon
chr14:14920132-14920233
Length
81 bp
Sequences
Splice sites
3' ss Seq
GAGAAAAATATTTATTACAGGTG
3' ss Score
4.43
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTGCACATCCAACAGCCTGCGGCACTGTGTGAGCGCCGGGGAGCCAATCAACCCCGAGGTGATGGCCAAGTGGAAAGCATGGACAGGGCTGGATATCCATGAATGCTACGGACAAACAGAAACT
Seq A exon
GTGCTTGTCTGTGGAAATTTTAAAGGAATGGAAATTAAACCTGGCTCTATGGGAAAGCCATCACCAGGGTATGATGTCAAG
Seq C2 exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'8-13,'8-12,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.2=100)
C2:
PF0050123=AMP-binding=FE(7.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACATCCAACAGCCTGC
R:
CCTTCTTTTCCAGGAGGCAGA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]