HsaEX1045709 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20784984-20790688:+
Coord C1 exon
chr16:20784984-20785107
Coord A exon
chr16:20786078-20786158
Coord C2 exon
chr16:20790587-20790688
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTTCTTAACTAGGTG
3' ss Score
11.35
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
CTATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCAATTACCCCTGACGTGACTGAAAAATGGAGAAACAAGACGGGCCTGGATATCTACGAAGGATATGGACAGACTGAAACG
Seq A exon
GTGCTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAACCTGGCTCAATGGGAAAACCTTCTCCTGCTTTCGATGTTAAG
Seq C2 exon
ATTGTAGATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGATATTGGCATTCAAGTTCTACCCAACCGACCATTTGGCCTTTTTACTCATTACGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'46-51,'46-47,48-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.7=100)
A:
PF0050123=AMP-binding=FE(32.9=100)
C2:
PF0050123=AMP-binding=FE(41.5=100),PF131931=AMP-binding_C=PU(12.7=22.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATTACCCCTGACGT
R:
GCCAAATGGTCGGTTGGGTAG
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains