MmuEX6013609 @ mm10
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:119777053-119779704:+
Coord C1 exon
chr7:119777053-119777176
Coord A exon
chr7:119778379-119778459
Coord C2 exon
chr7:119779603-119779704
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTCTCCTTGCCTAGGTG
3' ss Score
10.61
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CTATAAGTTCAACAGTTTGAAGCACTGTGTCAGTGCTGGAGAACCTATTAACCCTGAAGTGATGGAACAATGGAGAAAGAAGACGGGCCTAGACATCTATGAAGGATATGGACAGACAGAAACG
Seq A exon
GTGCTGATCTGTGGAAATTTCAAGGGGATGAAAATTAAGCCCGGCTCAATGGGAAAGCCTTCTCCTGCTTTTGATGTGAAG
Seq C2 exon
ATTTTAGATGAAAATGGTGCCACTCTTCCTCCTGGACAAGAAGGGGATATTGCTCTTCAAGTTCTTCCTGAGCGACCATTTGGCCTTTTTACTCATTATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'15-22,'15-21,17-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCAGTGCTGGAGAACC
R:
CCAAATGGTCGCTCAGGAAGA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types