GgaEX1003827 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15220918-15222076:-
Coord C1 exon
chr14:15221949-15222076
Coord A exon
chr14:15221467-15221566
Coord C2 exon
chr14:15220918-15221037
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTTGTTCTTCCCTTATCCAGGTA
3' ss Score
9.61
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GATAACCCTAAGAAAACTACAGAAAGCGAGCGTGGGGATTTTTACATCACAGGGGACAGAGCGACTATGGATGAAGATGGATATTTTTGGTTTATTGGAAGAGACGACGATATCATCATTTCTTCGGG
Seq A exon
GTATCGCATTGGGCCATTTGAGGTAGAGAGTGCCCTGATAGAACACCCAGCAGTAGCAGAAACAGCTGTTGTCAGCAGTCCAGATCCCCTCAGAGGAGAG
Seq C2 exon
GTTGTGAAAGCATTTGTGGTCCTGTCTGACGCCTTTTCATCCAGTGATTGTGAGAGCTTAGCCCGCGACTTGCAGGAGCATGTCAAGAAAACCACTGCTCCATATAAATACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.059 C2=0.025
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.8=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTAAGAAAACTACAGAAAGCGA
R:
TCCTGGGGTATTTATATGGAGCAGT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]