GgaEX1003877 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKH4]
Coordinates
chr1:88031436-88034394:+
Coord C1 exon
chr1:88031436-88031572
Coord A exon
chr1:88032802-88032878
Coord C2 exon
chr1:88033995-88034394
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCATCATATTTCCTGTGCAGTGC
3' ss Score
8.16
5' ss Seq
CTTGTAGGC
5' ss Score
-0.17
Exon sequences
Seq C1 exon
GTCATCTTGCTGGAACACTGCAGGAAGCTAGAGTGAGAATAATTAATCAAAGCATTTGCAGCAAGCTGTATGATGATCTCATCACATCACGCATGCTCTGTGCTGGGAACCTTAATGGTGGCATTGATGCATGCCAG
Seq A exon
TGCTTGAGATGAATGACGTTGAAGTTCAGGAAATTCCCACAGCACCCTGAAAACCCTTGTATTGCAATTCAAGCCTT
Seq C2 exon
GGAGATTCTGGAGGTCCCTTGGCCTGCACAGGAAAGGGAAATAGATGGTACCTTGCTGGCATTGTGAGCTGGGGTGAAGGATGTGCGCGACGCAATCGTCCTGGTGTATACACTAAGGTGACAGCACTTTATGACTGGATTCGTCAGAATACAAACTGATGTGCCAAGGAGAAAATGCAGATCATCTTCATTACAAAAACTGCTTCCTACATTATCAAGTACATGAACATGCTGCTGGCTGTTTCACTGTGGAAAAAAAAGCACTACCTTAATGCAGAAATGATCATTTGTCATTCACCTAGTGGTAACTGTTTGGATTCAGACCCAACTTCAAATAGCTTCAGGTTCCTTATGGATTCATACATCTTATTCCCTACCAGTGGAAACAGAGTTCCCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.2=100)
A:
PF0008921=Trypsin=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PD(19.7=86.8)
Main Inclusion Isoform:
ENSGALT00000024826fB4348
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATTTGCAGCAAGCTGT
R:
CCTTCACCCCAGCTCACAATG
Band lengths:
169-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]