GgaEX0025929 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKH4]
Coordinates
chr1:88027334-88034394:+
Coord C1 exon
chr1:88027334-88027517
Coord A exon
chr1:88031436-88031572
Coord C2 exon
chr1:88033995-88034394
Length
137 bp
Sequences
Splice sites
3' ss Seq
AGCATTTGTTTTTTTCCTAGGTC
3' ss Score
8.39
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
Seq A exon
GTCATCTTGCTGGAACACTGCAGGAAGCTAGAGTGAGAATAATTAATCAAAGCATTTGCAGCAAGCTGTATGATGATCTCATCACATCACGCATGCTCTGTGCTGGGAACCTTAATGGTGGCATTGATGCATGCCAG
Seq C2 exon
GGAGATTCTGGAGGTCCCTTGGCCTGCACAGGAAAGGGAAATAGATGGTACCTTGCTGGCATTGTGAGCTGGGGTGAAGGATGTGCGCGACGCAATCGTCCTGGTGTATACACTAAGGTGACAGCACTTTATGACTGGATTCGTCAGAATACAAACTGATGTGCCAAGGAGAAAATGCAGATCATCTTCATTACAAAAACTGCTTCCTACATTATCAAGTACATGAACATGCTGCTGGCTGTTTCACTGTGGAAAAAAAAGCACTACCTTAATGCAGAAATGATCATTTGTCATTCACCTAGTGGTAACTGTTTGGATTCAGACCCAACTTCAAATAGCTTCAGGTTCCTTATGGATTCATACATCTTATTCCCTACCAGTGGAAACAGAGTTCCCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
PF0008921=Trypsin=FE(19.2=100)
C2:
PF0008921=Trypsin=PD(19.7=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGGAAAGTGGCCTTGG
R:
TGTATACACCAGGACGATTGCG
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]