GgaEX1003876 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKH4]
Coordinates
chr1:88027334-88031572:+
Coord C1 exon
chr1:88027334-88027517
Coord A exon
chr1:88030137-88030304
Coord C2 exon
chr1:88031436-88031572
Length
168 bp
Sequences
Splice sites
3' ss Seq
GCCCATTTCCATCTTCATAGTTC
3' ss Score
6.87
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
Seq A exon
TTCCATTTATCCAGTGAATAGTAATAATCTACCTTCAAGTCAAGAAAACAGGAACTTGGAAATACAGAGGAGAAAGACTTTGTCTCTAAGGCTGTGGTTAACAATATGGAGCCCCTGAAATAACTGCAAGAATATGGTGGCTTTTGGAGTTGTCTGTCTTAACCAAAG
Seq C2 exon
GTCATCTTGCTGGAACACTGCAGGAAGCTAGAGTGAGAATAATTAATCAAAGCATTTGCAGCAAGCTGTATGATGATCTCATCACATCACGCATGCTCTGTGCTGGGAACCTTAATGGTGGCATTGATGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221_MULTIEX1-2/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
NA
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGGAAAGTGGCCTTGG
R:
TTAAGGTTCCCAGCACAGAGC
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]