GgaEX1003875 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKH4]
Coordinates
chr1:88027334-88031572:+
Coord C1 exon
chr1:88027334-88027517
Coord A exon
chr1:88029602-88029782
Coord C2 exon
chr1:88031436-88031572
Length
181 bp
Sequences
Splice sites
3' ss Seq
TAAAAACATTCTCTTTACAGATA
3' ss Score
9.66
5' ss Seq
CTGGTACAG
5' ss Score
3.91
Exon sequences
Seq C1 exon
CTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
Seq A exon
ATACTCTGCTCCATCAAGGTGGAGAGCATATATGGGCTTACACACTGTTAATGAAAAGAGCAATCACATAGCCATGAGATCGATCAAAAGGATTATTGTCCACCCACAGTATGACCAATCTATCTCAGATTATGACATAGCCCTGTTGGAAATGGAGACACCTGTATTCTTCAGCGAGCTG
Seq C2 exon
GTCATCTTGCTGGAACACTGCAGGAAGCTAGAGTGAGAATAATTAATCAAAGCATTTGCAGCAAGCTGTATGATGATCTCATCACATCACGCATGCTCTGTGCTGGGAACCTTAATGGTGGCATTGATGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221_MULTIEX1-1/4=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
PF0008921=Trypsin=FE(38.9=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGGAAAGTGGCCTTGG
R:
TTAAGGTTCCCAGCACAGAGC
Band lengths:
246-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]