GgaEX1003875 @ galGal3
Exon Skipping
Gene
ENSGALG00000019221 | F1NKH4_CHICK
Description
NA
Coordinates
chr1:91932646-91936885:+
Coord C1 exon
chr1:91932646-91932830
Coord A exon
chr1:91934915-91935186
Coord C2 exon
chr1:91936749-91936885
Length
272 bp
Sequences
Splice sites
3' ss Seq
TAAAAACATTCTCTTTACAGATA
3' ss Score
9.66
5' ss Seq
ATAGTATGT
5' ss Score
4.41
Exon sequences
Seq C1 exon
GCTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
Seq A exon
ATACTCTGCTCCATCAAGGTGGAGAGCATATATGGGCTTACACACTGTTAATGAAAAGAGCAATCACATAGCCATGAGATCGATCAAAAGGATTATTGTCCACCCACAGTATGACCAATCTATCTCAGATTATGACATAGCCCTGTTGGAAATGGAGACACCTGTATTCTTCAGCGAGCTGGTACAGCCCATTTGTTTACCAAGCAGCTCTAGAGTATTTCTTTATGGAACTGTCTGCTATGTAACTGGCTGGGGAGCCATAAAAGAAAATA
Seq C2 exon
GTCATCTTGCTGGAACACTGCAGGAAGCTAGAGTGAGAATAATTAATCAAAGCATTTGCAGCAAGCTGTATGATGATCTCATCACATCACGCATGCTCTGTGCTGGGAACCTTAATGGTGGCATTGATGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
PF0008921=Trypsin=FE(38.9=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGGAAGAAATCTGTTTAAGA
R:
TTAAGGTTCCCAGCACAGAGC
Band lengths:
300-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]