BtaEX0037182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57260021-57264639:+
Coord C1 exon
chr1:57260021-57260192
Coord A exon
chr1:57262140-57262408
Coord C2 exon
chr1:57264503-57264639
Length
269 bp
Sequences
Splice sites
3' ss Seq
CTTCATTCCTTTTGTACCAGGCT
3' ss Score
6.36
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTGCAGCAGCAGTTCCCCCACCCTCCACCGCATCATCGGGGGCACTGACACCCAGGAGGGGGGTTGGCCGTGGCAAGTCAGCCTCCACTTCGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTCCTCTCTGCTGCCCACTGTTTCCATGGAAGCAG
Seq A exon
GCTGTCTGATCCCACACCGTGGACTGCTCACCTTGGCATGAATGTGCAGGGGAATGCCAAGTTCATCTCCCCAGTGAGAAGAATTGTGGTCCATGAATACTATAACAGCCAGACCTTTGATTATGATATTGCCTTGCTACAGCTCAGTGTTGCCTGGCCTGAGACCCTGAAGCAGCTCATCCAGCCAATATGCATTCCTCCTGCTGGCCAGAAAGTGCGCAGTGGAGAGAAGTGCTGGGTGACCGGCTGGGGGCGCAGGCACGAAGCAG
Seq C2 exon
ACAATAAAGGCTCCCCCATTTTGCAGCAAGCAGAGGTAGAACTCATTGACCAAACCCTCTGTGTTTCCACCTATGGCATCATCACTTCGAGGATGCTCTGTGCGGGTGTCATGTCAGGCAAGAAAGATGCTTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=79.3)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGTTCCCCCAC
R:
TTCTTGCCTGACATGACACCC
Band lengths:
292-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development