DreEX6094968 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21698365-21700694:-
Coord C1 exon
chr24:21700496-21700694
Coord A exon
chr24:21700128-21700396
Coord C2 exon
chr24:21698365-21698501
Length
269 bp
Sequences
Splice sites
3' ss Seq
GTGATCTTTGATGCTTTCAGGTT
3' ss Score
8.64
5' ss Seq
AGGGTAACA
5' ss Score
4.9
Exon sequences
Seq C1 exon
CCTGTGGCAAACCCACCCATGTAAAACGTGTATTAGATGGCACCAGCCCTCAGCAGCGTATTGTGGGTGGAGTCAATGCTGTGGAGGGGGAGTGGCCATGGCAGGTCAGCATGCATTTTTCTGGTCAGCTGTATTGTGGAGCTTCAGTCCTCTCTGATGTGTGGCTTATTTCCGCAGCACACTGTTACAGCAAAGAAAG
Seq A exon
GTTGGCAGATCCACGTATGTGGATGGCTCATTTGGGAATGCTGAACCAGGGCAGTGCCAAGCATGTGGCCGAGATCCGTCGAATTGTGGTGCATGAGTACTACAATGCAAGAAATTTTGACTATGATATTGCCCTCCTGCAGTTGAAGAAGGTCTGGCCAAGCGGACTGGAACAATATATCCAGCCTGTGTGCCTGCCGGCCCCATCCCAAACCTTTACTGAGGGACACCGCTGCTGGGTGACTGGCTGGGGTTATCGTTCTGAACAGG
Seq C2 exon
ATAAGGTACTACCCACAGTTTTGCAAAAGGCGGAAGTTAACGTTTTAAGTCAGAGTGAATGCAAGAGAAGTTACGGCCCTGTGTCGCCCCGCATGCTGTGCGCTGGTGTGCCCTCAGGAGAACAGGATGCCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=68.7)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTATTAGATGGCACCAGC
R:
AGGCATCCTGTTCTCCTGAGG
Band lengths:
306-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]