MmuEX6062638 @ mm10
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45658043-45662325:-
Coord C1 exon
chr16:45662154-45662325
Coord A exon
chr16:45660640-45660908
Coord C2 exon
chr16:45658043-45658179
Length
269 bp
Sequences
Splice sites
3' ss Seq
CTTGATTCCTTTTCTACTAGGCT
3' ss Score
6.57
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTGTAGCAGGAGTTCTTCCTTCCTTCACCGAATCGTTGGTGGTTCTGACTCCCAGGAGGGGACCTGGCCATGGCAGGTCAGCCTCCACTTTGTTGGATCAGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTCTCTGCAGCCCATTGTTTCCATGGAAACAG
Seq A exon
GCTGTCTGACCCCACGCCATGGACTGCTCACCTTGGGATGTATGTGCAGGGGAATGCCAAGTTTATCTCTCCAGTGAGAAGGATTGTGGTCCATGAATACTACAACAGCCAGACTTTTGACTATGACATTGCCTTGCTGCAGCTCAGCATAGCCTGGCCTGAAACCCTGAAACAGCTCATTCAACCAATATGCATTCCTCCAGCGGGCCAGAAAGTGCGCAGTGGGGAGAAGTGCTGGGTGACTGGCTGGGGGAGAAGGCATGAAGCAG
Seq C2 exon
ATAGTAAGGGCTCCCCGGTTTTGCAGCAAGCGGAGGTAGAGCTCATAGATCAAACCGTCTGTGTTTCCACCTATGGGATCATCACGTCGCGCATGCTCTGTGCAGGGGTTATGTCTGGCAAGAGCGACGCCTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-'24-21,'24-20,25-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=79.3)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCTTCCTTCCTTCACCG
R:
CGTCGCTCTTGCCAGACATAA
Band lengths:
292-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types