HsaEX6057629 @ hg19
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111794168-111797725:+
Coord C1 exon
chr3:111794168-111794339
Coord A exon
chr3:111795723-111795991
Coord C2 exon
chr3:111797589-111797725
Length
269 bp
Sequences
Splice sites
3' ss Seq
TTTCATTACTGTTCTATCAGGCT
3' ss Score
6.28
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTGCAGCAGGAGTTCCTCCGCCCTTCACCGCATCATCGGAGGCACAGACACCCTGGAGGGGGGTTGGCCGTGGCAGGTCAGCCTCCACTTTGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTTTCTGCAGCCCACTGTTTTCATGGAAACAG
Seq A exon
GCTGTCAGATCCCACACCATGGACTGCACACCTCGGGATGTATGTTCAGGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGGTCCACGAGTACTATAACAGTCAGACTTTTGATTATGATATTGCTTTGCTACAGCTCAGTATTGCCTGGCCTGAGACCCTGAAACAGCTCATTCAGCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAGTGGGGAGAAGTGCTGGGTAACTGGCTGGGGGCGAAGACACGAAGCAG
Seq C2 exon
ATAATAAAGGCTCCCTCGTTCTGCAGCAAGCGGAGGTAGAGCTCATTGATCAAACGCTCTGTGTTTCCACCTACGGGATCATCACTTCTCGGATGCTCTGTGCAGGCATAATGTCAGGCAAGAGAGATGCCTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'20-26,'20-25,21-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=79.3)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCCTCCGCCCTTCA
R:
GCATCTCTCTTGCCTGACATT
Band lengths:
293-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)