GgaEX0025929 @ galGal3
Exon Skipping
Gene
ENSGALG00000019221 | F1NKH4_CHICK
Description
NA
Coordinates
chr1:91932646-91939449:+
Coord C1 exon
chr1:91932646-91932830
Coord A exon
chr1:91936749-91936885
Coord C2 exon
chr1:91939308-91939449
Length
137 bp
Sequences
Splice sites
3' ss Seq
AGCATTTGTTTTTTTCCTAGGTC
3' ss Score
8.39
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
Seq A exon
GTCATCTTGCTGGAACACTGCAGGAAGCTAGAGTGAGAATAATTAATCAAAGCATTTGCAGCAAGCTGTATGATGATCTCATCACATCACGCATGCTCTGTGCTGGGAACCTTAATGGTGGCATTGATGCATGCCAG
Seq C2 exon
GGAGATTCTGGAGGTCCCTTGGCCTGCACAGGAAAGGGAAATAGATGGTACCTTGCTGGCATTGTGAGCTGGGGTGAAGGATGTGCGCGACGCAATCGTCCTGGTGTATACACTAAGGTGACAGCACTTTATGACTGGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221-'0-2,'0-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
PF0008921=Trypsin=FE(19.2=100)
C2:
PF0008921=Trypsin=PD(19.7=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGGAAAGTGGCCTTGG
R:
TGTATACACCAGGACGATTGCG
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]