BtaEX6000888 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57262140-57268918:+
Coord C1 exon
chr1:57262140-57262408
Coord A exon
chr1:57264503-57264639
Coord C2 exon
chr1:57268648-57268918
Length
137 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGTGTATTTTCCAGACA
3' ss Score
8.68
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCTGTCTGATCCCACACCGTGGACTGCTCACCTTGGCATGAATGTGCAGGGGAATGCCAAGTTCATCTCCCCAGTGAGAAGAATTGTGGTCCATGAATACTATAACAGCCAGACCTTTGATTATGATATTGCCTTGCTACAGCTCAGTGTTGCCTGGCCTGAGACCCTGAAGCAGCTCATCCAGCCAATATGCATTCCTCCTGCTGGCCAGAAAGTGCGCAGTGGAGAGAAGTGCTGGGTGACCGGCTGGGGGCGCAGGCACGAAGCAG
Seq A exon
ACAATAAAGGCTCCCCCATTTTGCAGCAAGCAGAGGTAGAACTCATTGACCAAACCCTCTGTGTTTCCACCTATGGCATCATCACTTCGAGGATGCTCTGTGCGGGTGTCATGTCAGGCAAGAAAGATGCTTGCAGA
Seq C2 exon
GGAGATTCAGGTGGACCTTTATCCTGTCGAAGAAAGAGTGATGGAAAATGGATTTTGACTGGCATTGTTAGCTGGGGTCATGGATGTGGAAGACCAAACTTTCCTGGTGTTTACACAAGGGTGTCAAACTTTGTTCCCTGGATTCATAAATATGTCCCTTCCCTTTTGTAATTGTGCAAGTTTGATTTTTGACTGTGTTTTATGTGATAGATTCTTTTAAAAGGAATGCAGTAAGTGTCAATAAAATGAGATAATTTTTTTCTTCTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'17-16,'17-15,18-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCTCAGTGTTGCCTGG
R:
CACCCTTGTGTAAACACCAGGA
Band lengths:
256-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]