RnoEX6056989 @ rn6
Exon Skipping
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60134948-60138027:+
Coord C1 exon
chr11:60134948-60135216
Coord A exon
chr11:60136210-60136346
Coord C2 exon
chr11:60137795-60138027
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTCCCCAATATGTCTTACAGACA
3' ss Score
6.41
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGTCCGACCCCACCCCATGGACTGCTCACCTTGGGATGTACGTGCAGGGGAACGCCAAGTTTGTCTCTCCAGTAAGAAGGATTGTGGTCCACGAATACTACAACAGCCAGACTTTTGATTATGACATTGCTTTGCTGCAGCTCAGCATAGCCTGGCCTGAAACCCTGAGACAGCTCATTCAACCTATATGTATTCCTCCAGTTGGCCAGAGAGTGCGCAGTGGGGAGAAGTGCTGGGTGACGGGCTGGGGGCGAAGGCATGAAGCAG
Seq A exon
ACAGTAAAGGCTCCCCCATTTTGCAGCAAGCGGAGGTAGAGCTCATAGATCAAACCGTCTGTGTTTCCACCTACGGGATCATCACCTCTCGGATGCTCTGTGCAGGGGTTATGTCTGGCAAGAGCGATGCCTGCAAA
Seq C2 exon
GGAGATTCAGGTGGACCTTTGTCTTGTCGAAGAAAGAGTGATGGGAAATGGATTCTGACCGGCATTGTTAGCTGGGGATATGGATGTGGAAGACCAAATTTTCCTGGTGTTTACACACGGGTGTCAAACTTTGTCCCCTGGATTCATAAGTATGTCCCTTCTCTTTTGTAACTGTACAAGATGAATTTTTAACTGTGACTTTGATATGGGACTGTGCTAGATCCTTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-'27-26,'27-25,28-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAACCCTGAGACAGCTC
R:
GGGACAAAGTTTGACACCCGT
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]