GgaEX6003943 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91913234-91915676:+
Coord C1 exon
chr1:91913234-91913502
Coord A exon
chr1:91914215-91914351
Coord C2 exon
chr1:91915441-91915676
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTTTCAATTTGTTTTCCAGATG
3' ss Score
10.89
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
GCTGGCTGACCCCAGAGCGTGGCGTGCTCACTTGGGGATGCGAATACAAGGCCGTGCAAAGTTTGTATCTGCAGTGAGACGGATCATTGTCCACGAGTACTACAACAGCAGGAACTATGACTACGACATTGCGTTGCTGCAGCTGAGCAAGCCATGGCCTGATACAATGAGCCATGTCATTCAGCCAATCTGTGTGCCTCCTTTCTCGCACAAAGTCCGCAGTGGTGACAAGTGCTGGATAACAGGTTGGGGCCAAAAGCAGGAAGCGG
Seq A exon
ATGACGAAGGTGCTGCAATTCTTCAGAAAGCAGAGGTAGAAATTATTGACCAAACATTGTGTCATTCCACGTATGGAATTATCACAGCTAGAATGTTTTGTGCAGGATTAATGTCTGGAAGAAGAGATGGGTGCAAA
Seq C2 exon
GGTGATTCTGGTGGACCATTGTCATGTCAAAGCAATGAAGATGGAAAATGGTTTTTGACTGGCATTGTTAGCTGGGGTTATGGATGTGGAAGACCAAATTTTCCTGGTGTCTACACAAGAGTGTCAAATCTTGCACCATGGATTTACAAACATGTGCCTTCAGTCATGTAACTTGAAAGCTATTTCACTGGAATAAAACATGTGCTGGATATCTTCATTAAAAAGCATGTTTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTACGACATTGCGTTGCT
R:
TCCACATCCATAACCCCAGCT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]