HsaEX6057628 @ hg38
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr3:112076876-112081165:+
Coord C1 exon
chr3:112076876-112077144
Coord A exon
chr3:112078742-112078878
Coord C2 exon
chr3:112080914-112081165
Length
137 bp
Sequences
Splice sites
3' ss Seq
ACTTCCAATGTGTTTTGCAGATA
3' ss Score
9.72
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGTCAGATCCCACACCATGGACTGCACACCTCGGGATGTATGTTCAGGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGGTCCACGAGTACTATAACAGTCAGACTTTTGATTATGATATTGCTTTGCTACAGCTCAGTATTGCCTGGCCTGAGACCCTGAAACAGCTCATTCAGCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAGTGGGGAGAAGTGCTGGGTAACTGGCTGGGGGCGAAGACACGAAGCAG
Seq A exon
ATAATAAAGGCTCCCTCGTTCTGCAGCAAGCGGAGGTAGAGCTCATTGATCAAACGCTCTGTGTTTCCACCTACGGGATCATCACTTCTCGGATGCTCTGTGCAGGCATAATGTCAGGCAAGAGAGATGCCTGCAAA
Seq C2 exon
GGAGATTCGGGTGGACCTTTATCTTGTCGAAGAAAAAGTGATGGAAAATGGATTTTGACTGGCATTGTTAGCTGGGGACATGGAAGTGGACGACCAAACTTTCCTGGTGTTTACACAAGGGTGTCAAACTTTGTTCCCTGGATTCATAAATATGTCCCTTCTCTTTTGTAATTGTACCAGTTGTATTTTTACTGTGATTTATGTTAAAAATAGATACTTTAAAATGATGCAGTAATTGGCTGGGTGCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'19-23,'19-22,20-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAAGTTTGTCTCCCCG
R:
CGACAAGATAAAGGTCCACCCG
Band lengths:
246-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains