MmuEX6062639 @ mm10
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45656315-45660908:-
Coord C1 exon
chr16:45660640-45660908
Coord A exon
chr16:45658043-45658179
Coord C2 exon
chr16:45656315-45656578
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATCCCTAATGTGTCTTGCAGATA
3' ss Score
9.69
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGTCTGACCCCACGCCATGGACTGCTCACCTTGGGATGTATGTGCAGGGGAATGCCAAGTTTATCTCTCCAGTGAGAAGGATTGTGGTCCATGAATACTACAACAGCCAGACTTTTGACTATGACATTGCCTTGCTGCAGCTCAGCATAGCCTGGCCTGAAACCCTGAAACAGCTCATTCAACCAATATGCATTCCTCCAGCGGGCCAGAAAGTGCGCAGTGGGGAGAAGTGCTGGGTGACTGGCTGGGGGAGAAGGCATGAAGCAG
Seq A exon
ATAGTAAGGGCTCCCCGGTTTTGCAGCAAGCGGAGGTAGAGCTCATAGATCAAACCGTCTGTGTTTCCACCTATGGGATCATCACGTCGCGCATGCTCTGTGCAGGGGTTATGTCTGGCAAGAGCGACGCCTGCAAA
Seq C2 exon
GGAGATTCAGGAGGACCTTTGTCTTGTCGAAGAAAGAGTGATGGAAAATGGATTCTGACTGGCATTGTTAGCTGGGGACATGGATGTGGAAGACCCAATTTTCCTGGTGTCTACACAAGGGTGTCAAGCTTTGTTCCCTGGATTCATAAGTATGTCCCTTCTCTTTTGTAACTGTAACAGATGGATTGTTAACTGTGACTTATATGAGGATAGATCCTTGAAAAAGAATGTAAGTATTATCAATAAAATTAATCATTTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-'25-22,'25-21,28-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAAACCCTGAAACAGCT
R:
GGGAACAAAGCTTGACACCCT
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types