GgaEX1004356 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr6:30859638-30862489:+
Coord C1 exon
chr6:30859638-30859846
Coord A exon
chr6:30861530-30861702
Coord C2 exon
chr6:30862095-30862489
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATTCCTATTTTCTGCCCTAGCCC
3' ss Score
7.94
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTGCAAGGTGGATGCCAGTATGACTATATTGAGATCTATGATGGTCCACCAAGTACTTCTCCTCTGCTTGGAAAAATTTGTTCTGGTTATAATATCATGTACACATCCTCCTCAAATATGATGACCGTCAGATTTCGCAGTGACTCTAGATATTCAAACAGAGGGTTTTATGCTGATTATCACTCCTTTCCAGCAGATCAGAACACCG
Seq A exon
CCCTCTTTTGCTTCCCAACCCACATGCGTGCAGTTGTAGAGAGAAGCTATCTCCAGTCACAGGGTTACTCTGTGTGGAATGCTAGCTTGTCTGACCCTTCTTGTAGACCAAAAATTACATCAACCCAGGTTATATTCGACATTCCATACAACAGCTGCGGTACCCGTAGACAG
Seq C2 exon
AGCAACAATGAGACATTCACATATTCCAACGTGATAAGGGTATTTGCTTCTGATTCCATCATCAAGAGGAAAAAGGACCTTCACTTGCATGTGAACTGCAAAATGCTCCAGAAGACCTGGGTACAAGCAATGTACATTGCTAACGACAGTGGTGTTACTGATATTGATGAAACCCAATATGGCAGATACCAAGTGGACTTTGCATTCTACAATTCCTCCTCTTTCCTTCTGCCAGTATATGACTCTCCTTACTATGTTGACCTGAATCAGAATTTGTTCCTTCAAGCTTCTCTTCGCAGCAATGACTCCAATCTTGTGCTGTTTGTGGATACGTGTGTGGCATCACCTGATCCTAACGATTTTACAACACTGACCTATGACTTGATCAGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023424-'12-13,'12-12,14-13
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.1=84.5)
A:
PF0010018=Zona_pellucida=PU(22.3=94.8)
C2:
PF0010018=Zona_pellucida=FE(53.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCAGATCAGAACACCG
R:
TGGCAGAAGGAAAGAGGAGGA
Band lengths:
255-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]