GgaEX7006600 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr6:30861530-30863777:+
Coord C1 exon
chr6:30861530-30861702
Coord A exon
chr6:30862095-30862489
Coord C2 exon
chr6:30863506-30863777
Length
395 bp
Sequences
Splice sites
3' ss Seq
TCACCTAATGTGTCCAACAGAGC
3' ss Score
7.27
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCCTCTTTTGCTTCCCAACCCACATGCGTGCAGTTGTAGAGAGAAGCTATCTCCAGTCACAGGGTTACTCTGTGTGGAATGCTAGCTTGTCTGACCCTTCTTGTAGACCAAAAATTACATCAACCCAGGTTATATTCGACATTCCATACAACAGCTGCGGTACCCGTAGACAG
Seq A exon
AGCAACAATGAGACATTCACATATTCCAACGTGATAAGGGTATTTGCTTCTGATTCCATCATCAAGAGGAAAAAGGACCTTCACTTGCATGTGAACTGCAAAATGCTCCAGAAGACCTGGGTACAAGCAATGTACATTGCTAACGACAGTGGTGTTACTGATATTGATGAAACCCAATATGGCAGATACCAAGTGGACTTTGCATTCTACAATTCCTCCTCTTTCCTTCTGCCAGTATATGACTCTCCTTACTATGTTGACCTGAATCAGAATTTGTTCCTTCAAGCTTCTCTTCGCAGCAATGACTCCAATCTTGTGCTGTTTGTGGATACGTGTGTGGCATCACCTGATCCTAACGATTTTACAACACTGACCTATGACTTGATCAGAAGTGG
Seq C2 exon
GTGTGCTAAAGACCCTACCTACTCTTCTTACTACTCACCATATCCAAGTGTCAGTCGGTTTGCATTTAATGCATTCTCCTTTGTTAACCGCTACCCATCAGTCTACCTGCAGTGTGAGCTGGTGGTGTGCAGGTATGGAGACTATTCTTCCCGCTGCTACCAAGGCTGTGTGAGCAGGTTCAGGAGGAGTGCAGGATCTTCCCAGGGAAAAGTGAGTGTTGTCATCGGACCTGTTCAACTTCAGGAGACTCCCCCTGAGAAGAGGAGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023424-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.3=94.8)
A:
PF0010018=Zona_pellucida=FE(53.0=100)
C2:
PF0010018=Zona_pellucida=PD(23.9=64.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATGCGTGCAGTTGTAGA
R:
GGAAGATCCTGCACTCCTCCT
Band lengths:
356-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]